mariadb: Upgrade to 10.3.13

Per https://mariadb.org/about/maintenance-policy/,
mariadb 5.5.x series only supported until next year
April 2020, so upgrade it to 10.3.13.

Remove some deprecated patches, add some
new patches to fix build failure and rework
two patches to avoid fuzz warnings.

Add -latomic to linker flags for armv5

Use -pthread to link for mussing  atomic symbols on arches e.g. riscv

Fixes issues like
ld.bfd: librocksdblib.a(memtable.cc.o):/usr/include/c++/9.0.1/bits/atomic_base.h:438: more undefined references to `__atomic_compare_exchange_1' follow

Fix build with musl

add libxml2 to depends

Fix build with clang

Signed-off-by: Mingli Yu <mingli.yu@windriver.com>
Signed-off-by: Khem Raj <raj.khem@gmail.com>

1 files changed, 10 insertions, 6 deletions

diff --git a/meta-oe/recipes-dbs/mysql/mariadb/fix-a-building-failure.patch b/meta-oe/recipes-dbs/mysql/mariadb/fix-a-building-failure.patch
index 0c4e10237c..9149ee21f2 100644
--- a/meta-oe/recipes-dbs/mysql/mariadb/fix-a-building-failure.patch
+++ b/meta-oe/recipes-dbs/mysql/mariadb/fix-a-building-failure.patch
@@ -1,4 +1,7 @@
-[PATCH] fix a building failure
+From 1b2b6a61c9f82157cd2e0c3744f6c07e07aeb0bd Mon Sep 17 00:00:00 2001
+From: Mingli Yu <mingli.yu@windriver.com>
+Date: Mon, 4 Mar 2019 01:11:30 -0800
+Subject: [PATCH] fix a building failure
 
 Upstream-Status: Inappropriate [configuration]
 
@@ -6,17 +9,18 @@ building failed since native does not generate import_executables.cmake
 In fact, our building system will export the needed commands
 
 Signed-off-by: Roy Li <rongqing.li@windriver.com>
+Signed-off-by: Mingli Yu <mingli.yu@windriver.com>
 ---
  CMakeLists.txt | 5 -----
  1 file changed, 5 deletions(-)
 
 diff --git a/CMakeLists.txt b/CMakeLists.txt
-index c1ce1c5..83b3a7e 100644
+index fc30750..4f9110e 100644
 --- a/CMakeLists.txt
 +++ b/CMakeLists.txt
-@@ -350,11 +350,6 @@ MYSQL_CHECK_READLINE()
+@@ -347,11 +347,6 @@ CHECK_PCRE()
  
- CHECK_JEMALLOC()
+ CHECK_SYSTEMD()
  
 -IF(CMAKE_CROSSCOMPILING)
 -  SET(IMPORT_EXECUTABLES "IMPORTFILE-NOTFOUND" CACHE FILEPATH "Path to import_executables.cmake from a native build")
@@ -24,8 +28,8 @@ index c1ce1c5..83b3a7e 100644
 -ENDIF()
 -
  #
- # Setup maintainer mode options by the end. Platform checks are
+ # Setup maintainer mode options. Platform checks are
  # not run with the warning options as to not perturb fragile checks
 -- 
-1.9.1
+2.17.1