mariadb: Upgrade to 10.3.13

Per https://mariadb.org/about/maintenance-policy/,
mariadb 5.5.x series only supported until next year
April 2020, so upgrade it to 10.3.13.

Remove some deprecated patches, add some
new patches to fix build failure and rework
two patches to avoid fuzz warnings.

Add -latomic to linker flags for armv5

Use -pthread to link for mussing  atomic symbols on arches e.g. riscv

Fixes issues like
ld.bfd: librocksdblib.a(memtable.cc.o):/usr/include/c++/9.0.1/bits/atomic_base.h:438: more undefined references to `__atomic_compare_exchange_1' follow

Fix build with musl

add libxml2 to depends

Fix build with clang

Signed-off-by: Mingli Yu <mingli.yu@windriver.com>
Signed-off-by: Khem Raj <raj.khem@gmail.com>

1 files changed, 3 insertions, 5 deletions

diff --git a/meta-oe/recipes-dbs/mysql/mariadb/0001-disable-ucontext-on-musl.patch b/meta-oe/recipes-dbs/mysql/mariadb/0001-disable-ucontext-on-musl.patch
index 60e9199f95..daf2432a54 100644
--- a/meta-oe/recipes-dbs/mysql/mariadb/0001-disable-ucontext-on-musl.patch
+++ b/meta-oe/recipes-dbs/mysql/mariadb/0001-disable-ucontext-on-musl.patch
@@ -1,4 +1,4 @@
-From 5bc3e7ef9700d12054e0125a126f1bb093f01ef9 Mon Sep 17 00:00:00 2001
+From b658bdb38b7ff6a78915fd0ac390fc224e4006cb Mon Sep 17 00:00:00 2001
 From: Khem Raj <raj.khem@gmail.com>
 Date: Sun, 26 Mar 2017 14:30:33 -0700
 Subject: [PATCH] disable ucontext on musl
@@ -6,12 +6,13 @@ Subject: [PATCH] disable ucontext on musl
 musl does not have *contex() APIs even though it has ucontext.h header
 
 Signed-off-by: Khem Raj <raj.khem@gmail.com>
+
 ---
  include/my_context.h | 2 +-
  1 file changed, 1 insertion(+), 1 deletion(-)
 
 diff --git a/include/my_context.h b/include/my_context.h
-index dd44103..9b28c17 100644
+index ea0e3496..4c9b37dc 100644
 --- a/include/my_context.h
 +++ b/include/my_context.h
 @@ -31,7 +31,7 @@
@@ -23,6 +24,3 @@ index dd44103..9b28c17 100644
  #define MY_CONTEXT_USE_UCONTEXT
  #else
  #define MY_CONTEXT_DISABLE
--- 
-2.12.1
-